[关键词]
[摘要]
目的:采用生物信息方法预测和鉴定survivin抗原HLAA2+限制性CTL表位,为探索基于survivin的肿瘤免疫治疗奠定基础。〖HT5W〗方法:〖HT5"SS〗采用超基序法和量化基序法对靶抗原survivin HLAA2+限制性 CTL表位进行预测;选取得分>10的表位肽为候选对象,并进行人工合成。采用T2细胞,以HLAA2结合实验和流式细胞术(FITC染色)检测候选CTL表位肽的结合亲和力\[以荧光系数(fluorescence index,FI)表示\];以HLAA2解离实验和流式细胞术检测其结合稳定性\[以复合物解离50%的时间DC50(dissociation complex 50%)表示\]。〖HT5W〗结果:〖HT5"SS〗预测到的候选survivin CTL表位肽分别是:20STFKNWPFL28 (SV2028)、23KNWPFLEGC31 (SV2331)、96LTLGEFLKL104 (SV96104)、6LPPAWQPFL14 (SV614)、33CTPERMAEA41 (SV3341)、46CPTENEPDL54 (SV4654)、130KVRRAIEQL138 (SV130138)、37RMAEAGFIH45 (SV3745)、88SVKKQFEEL96 (SV8896)。亲和力分析显示: SV2028 、SV96104、SV130138、SV2331的FI分别为8.61、6.88、5.89、3.81;SV3341、SV614、 SV4654、 SV3745 、SV8896的FI分别为0.31、-0.29、-04、-0.16和-0.03;稳定性分析结果DC50为:SV2028、SV96104、SV130138 >8 h;SV2331 为4~6 h;SV614、SV3341、SV8896为2~4 h;SV4654、 SV3745为0~2 h。结果提示,SV2028 、 SV96104、SV130138为高亲和力表位肽,SV2331为中等亲和力表位肽,SV3341、SV614、 SV4654、 SV3745 、SV8896为低亲和力表位肽。〖HT5W〗结论:〖HT5"SS〗超基序法、量化基序法可快速有效地预测抗原表位,SV2028 、SV96104、SV130138有可能是survivin HLAA2+ CTL表位,可用于后续研究。
[Key word]
[Abstract]
Objective: To predict and identify survivin specific HLAA2+ CTL restricted epitopes by bioinformatic methods, so as to provide a foundation for survivinbased immunotherapy. Methods: Survivin specific HLAA2+ restricted CTL epotides were predicted by computer supermotif algorithm combined with quantitativemotif algorithm. Candidate epitopes were verified when their scores were higher than 10 and were then artificially synthesized. Affinity of candidate epitope was examined by HLAA2 binding assay combined with flow cytometry using T2 cells (shown as fluorescence index, FI). Stability of candidate epitope was evaluated by HLAA2 dissociation assay combined with flow cytometry (shown as 50% complex dissociation time, DC50). Results: Nine candidate epotides were obtained: 20STFKNWPFL28 (SV2028), 23KNWPFLEGC31 (SV2331), 96LTLGEFLKL104 (SV96104), 6LPPAWQPFL14 (SV614), 33CTPERMAEA41 (SV3341), 46CPTENEPDL54 (SV4654), 130KVRRAIEQL138(SV130138), 37RMAEAGFIH45(SV3745), and 88SVKKQFEEL96 (SV8896). HLAA2 binding assay showed that FI values of SV2028, SV96104, SV130138 and SV2331 epotides were 8.61, 688, 5.89 and 3.81, respectively; those of SV3341, SV614, SV4654, SV3745 and SV8896 epotides were 0.31, -0.29,-04,-0.16 and -0.03, respectively. HLAA2 dissociation assay showed that DC50 values of SV2028, SV96104 and SV130138 epotides were longer than 8 h; that of SV2331 epotide was 46 h; those of SV614, SV3341and SV8896 epotides were all 24 h; those of SV4654, SV3745 epotides were both 02 h. The above results demonstrated that SV2028, SV96104 and SV130138 were high affinity epotides; SV2331 was intermediate affinity epotide; and SV3341, SV614, SV4654, SV3745 and SV8896 were low affinity epotides. Conclusion: Antigen epitope can be quickly and efficiently predicted by supermotif algorithm combined with quantitativemotif algorithm. SV2028, SV96104 and SV130138 epitopes are survivin specific HLAA2+ restricted CTL epotides, which can be used for later research.
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[基金项目]
福建省科技发展计划重点项目(No.2008I0012)